diff --git a/modules/svdb/merge/main.nf b/modules/svdb/merge/main.nf index 05fb2b17..477dbb0d 100644 --- a/modules/svdb/merge/main.nf +++ b/modules/svdb/merge/main.nf @@ -48,7 +48,7 @@ process SVDB_MERGE { stub: def prefix = task.ext.prefix ?: "${meta.id}" """ - touch ${prefix}_sv_merge.vcf + touch ${prefix}_sv_merge.vcf.gz cat <<-END_VERSIONS > versions.yml "${task.process}": diff --git a/tests/modules/svdb/merge/test.yml b/tests/modules/svdb/merge/test.yml index 12355020..5af282ae 100644 --- a/tests/modules/svdb/merge/test.yml +++ b/tests/modules/svdb/merge/test.yml @@ -12,3 +12,10 @@ - svdb/merge files: - path: output/svdb/test_sv_merge.vcf.gz +- name: svdb merge test_svdb_merge_noprio stub + command: nextflow run ./tests/modules/svdb/merge -entry test_svdb_merge_noprio -c ./tests/config/nextflow.config -c ./tests/modules/svdb/merge/nextflow.config -stub + tags: + - svdb + - svdb/merge + files: + - path: output/svdb/test_sv_merge.vcf.gz