diff --git a/modules/spatyper/main.nf b/modules/spatyper/main.nf index ce320bfc..34207dbf 100644 --- a/modules/spatyper/main.nf +++ b/modules/spatyper/main.nf @@ -31,7 +31,6 @@ process SPATYPER { def prefix = options.suffix ? "${meta.id}${options.suffix}" : "${meta.id}" def input_args = repeats && repeat_order ? "-r ${repeats} -o ${repeat_order}" : "" """ - env spaTyper \\ $options.args \\ $input_args \\