Workflow and md5sums added

This commit is contained in:
sruthipsuresh 2020-12-18 13:40:30 -06:00
parent 8c088d473b
commit 522b896534
2 changed files with 46 additions and 3 deletions

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@ -0,0 +1,40 @@
name: phantompeakqualtools
on:
push:
paths:
- software/phantompeakqualtools/**
- .github/workflows/phantompeakqualtools.yml
- tests/software/phantompeakqualtools/**
pull_request:
paths:
- software/phantompeakqualtools/**
- .github/workflows/phantompeakqualtools.yml
- tests/software/phantompeakqualtools/**
jobs:
ci_test:
runs-on: ubuntu-latest
strategy:
matrix:
nxf_version: [20.07.1, ""]
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag phantompeakqualtools --symlink --wt 2

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@ -3,6 +3,9 @@
tags:
- phantompeakqualtools
files:
- path: output/phantompeakqualtools/test.single_end.sorted.bam.out
- path: output/phantompeakqualtools/test.single_end.sorted.bam.pdf
- path: output/phantompeakqualtools/test.single_end.sorted.bam.Rdata
- path: output/phantompeakqualtools/test.spp.out
md5sum: c18220e8082e695995edecc99235ec85
- path: output/phantompeakqualtools/test.spp.pdf
md5sum: 098765dccaf0384c3988ce3cdbd64ec4
- path: output/phantompeakqualtools/test.spp.Rdata
md5sum: 751283cd3aa02efef2ab0444a9cfb301