From 530b4c1bd9a5ee63ea9347020a96cfb490bd912f Mon Sep 17 00:00:00 2001
From: drpatelh <drhpatel@gmail.com>
Date: Thu, 6 Aug 2020 11:32:38 +0100
Subject: [PATCH] Add test directory

---
 software/SOFTWARE/TOOL/test/main.nf         | 15 +++++++++++++++
 software/SOFTWARE/TOOL/test/nextflow.config |  2 ++
 2 files changed, 17 insertions(+)
 create mode 100644 software/SOFTWARE/TOOL/test/main.nf
 create mode 100644 software/SOFTWARE/TOOL/test/nextflow.config

diff --git a/software/SOFTWARE/TOOL/test/main.nf b/software/SOFTWARE/TOOL/test/main.nf
new file mode 100644
index 00000000..13fef901
--- /dev/null
+++ b/software/SOFTWARE/TOOL/test/main.nf
@@ -0,0 +1,15 @@
+#!/usr/bin/env nextflow
+
+nextflow.enable.dsl = 2
+
+include '../../../../tests/functions/check_process_outputs.nf' params(params)
+include '../main.nf' params(params)
+
+reads = '../../../../test-datasets/tools/bwa/mem/reads/*_R{1,2}_001.fastq.gz'
+index = '../../../../test-datasets/tools/bwa/mem/index/H3N2.{amb,ann,bwt,pac,sa}'
+prefix = 'H3N2'
+
+workflow {
+  read_input=Channel.fromFilePairs(reads)
+  bwa_mem(read_input,file(index),prefix)
+}
diff --git a/software/SOFTWARE/TOOL/test/nextflow.config b/software/SOFTWARE/TOOL/test/nextflow.config
new file mode 100644
index 00000000..c137a138
--- /dev/null
+++ b/software/SOFTWARE/TOOL/test/nextflow.config
@@ -0,0 +1,2 @@
+docker.enabled = true
+params.outdir = './results'