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Fix kleborate inputs (#1172)

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* Fix kleborate inputs

* Update test.yml

Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
This commit is contained in:
Robert A. Petit III 2021-12-22 06:39:35 -05:00 committed by GitHub
parent 50eafb19c6
commit 5320ab7e6c
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2 changed files with 2 additions and 2 deletions
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2
modules/kleborate/main.nf
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@ -21,7 +21,7 @@ process KLEBORATE {
kleborate \\ kleborate \\
$args \\ $args \\
--outfile ${prefix}.results.txt \\ --outfile ${prefix}.results.txt \\
--assemblies *.fasta --assemblies $fastas
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":

2
tests/modules/kleborate/test.yml
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@ -4,4 +4,4 @@
- kleborate - kleborate
files: files:
- path: output/kleborate/test.results.txt - path: output/kleborate/test.results.txt
md5sum: b7979a71170736098fb8403cd92748f5 contains: ['strain', 'genome', 'scaffolds']