millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

Update path

Browse source
This commit is contained in:
drpatelh 2020-07-15 14:07:19 +01:00
parent 6028bb080b
commit 532859d437
4 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

0
software/fastqc/test/data/test_R1.fastq.gz → software/fastqc/test/input/test_R1.fastq.gz
View file

0
software/fastqc/test/data/test_R2.fastq.gz → software/fastqc/test/input/test_R2.fastq.gz
View file

0
software/fastqc/test/data/test_single_end.fastq.gz → software/fastqc/test/input/test_single_end.fastq.gz
View file

4
software/fastqc/test/main.nf
View file

@ -11,7 +11,7 @@ include { FASTQC } from '../main.nf'
* Test if FASTQC runs with single-end data
*/
workflow test_single_end {
input_files = Channel.fromPath("data/test_single_end.fastq.gz")
input_files = Channel.fromPath("input/test_single_end.fastq.gz")
.map {f -> [f.baseName, true, f]}
FASTQC(input_files)
}
@ -20,7 +20,7 @@ workflow test_single_end {
* Test if FASTQC runs with paired end data
*/
workflow test_paired_end {
input_files = Channel.fromFilePairs("data/test_R{1,2}.fastq.gz")
input_files = Channel.fromFilePairs("input/test_R{1,2}.fastq.gz")
.map {f -> [f[0], false, f[1]]}
FASTQC(input_files)
}