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Update mOTUs to remove now unused channel (#2075)

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* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files

* Update main.nf

* Remove now unnecessary input channel

* Remove unused channel from tests
This commit is contained in:
James A. Fellows Yates 2022-09-16 10:23:21 +02:00 committed by GitHub
parent b121596ae0
commit 54ff289487
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3 changed files with 2 additions and 6 deletions
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1
modules/motus/merge/main.nf
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@ -13,7 +13,6 @@ process MOTUS_MERGE {
tuple val(meta), path(input)
path db // to stop docker saying it can't find it... would have to have the module in upstream steps anyway
path profile_version_yml, stageAs: 'profile_version.yml'
val biom_format
output:
tuple val(meta), path("*.txt") , optional: true, emit: txt

3
modules/motus/merge/meta.yml
View file

@ -35,9 +35,6 @@ input:
this itself without having the motus database present and configured with the tool
so here we take it from what is already reported by the upstream module.
pattern: "versions.yml"
- biom_format:
type: boolean
description: Whether to save output OTU table in biom format
output:
- versions:

4
tests/modules/motus/merge/main.nf
View file

@ -24,7 +24,7 @@ workflow test_motus_merge {
MOTUS_DOWNLOADDB ( file('https://raw.githubusercontent.com/motu-tool/mOTUs/master/motus/downloadDB.py') )
MOTUS_PROFILE ( input, MOTUS_DOWNLOADDB.out.db )
MOTUS_MERGE ( MOTUS_PROFILE.out.out.map{ [[id:"test"], it[1]] }.groupTuple(), MOTUS_DOWNLOADDB.out.db, MOTUS_PROFILE.out.versions.first(), false )
MOTUS_MERGE ( MOTUS_PROFILE.out.out.map{ [[id:"test"], it[1]] }.groupTuple(), MOTUS_DOWNLOADDB.out.db, MOTUS_PROFILE.out.versions.first() )
}
@ -45,7 +45,7 @@ workflow test_motus_merge_biom {
MOTUS_DOWNLOADDB ( file('https://raw.githubusercontent.com/motu-tool/mOTUs/master/motus/downloadDB.py') )
MOTUS_PROFILE ( input, MOTUS_DOWNLOADDB.out.db )
MOTUS_MERGE_BIOM ( MOTUS_PROFILE.out.out.map{ [[id:"test"], it[1]] }.groupTuple(), MOTUS_DOWNLOADDB.out.db, MOTUS_PROFILE.out.versions.first(), false )
MOTUS_MERGE_BIOM ( MOTUS_PROFILE.out.out.map{ [[id:"test"], it[1]] }.groupTuple(), MOTUS_DOWNLOADDB.out.db, MOTUS_PROFILE.out.versions.first() )
}