millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 02:58:17 +00:00
Code Issues Releases Packages Activity

Add compression for output fastq file

Browse source
This commit is contained in:
ljmesi 2022-05-03 09:46:04 +02:00
parent 218400b632
commit 5503903457
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
modules/samtools/bam2fq/main.nf
View file

@ -45,7 +45,7 @@ process SAMTOOLS_BAM2FQ {
bam2fq \\
$args \\
-@ $task.cpus \\
$inputbam >${prefix}_interleaved.fq.gz
$inputbam | gzip > ${prefix}_interleaved.fq.gz
cat <<-END_VERSIONS > versions.yml
"${task.process}":