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Add compression for output fastq file

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ljmesi 2022-05-03 09:46:04 +02:00
parent 218400b632
commit 5503903457
1 changed files with 1 additions and 1 deletions
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modules/samtools/bam2fq/main.nf
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@ -45,7 +45,7 @@ process SAMTOOLS_BAM2FQ {
bam2fq \\ bam2fq \\
$args \\ $args \\
-@ $task.cpus \\ -@ $task.cpus \\
$inputbam >${prefix}_interleaved.fq.gz $inputbam | gzip > ${prefix}_interleaved.fq.gz
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":