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Test --no-name to solve inconsistent checksums
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commit
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2 changed files with 3 additions and 3 deletions
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@ -45,7 +45,7 @@ process SAMTOOLS_BAM2FQ {
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bam2fq \\
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bam2fq \\
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$args \\
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$args \\
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-@ $task.cpus \\
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-@ $task.cpus \\
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$inputbam | gzip > ${prefix}_interleaved.fq.gz
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$inputbam | gzip --no-name > ${prefix}_interleaved.fq.gz
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cat <<-END_VERSIONS > versions.yml
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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"${task.process}":
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@ -1,8 +1,8 @@
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- name: samtools bam2fq test_samtools_bam2fq_nosplit
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- name: samtools bam2fq test_samtools_bam2fq_nosplit
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command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_nosplit -c tests/config/nextflow.config
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command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_nosplit -c tests/config/nextflow.config
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tags:
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tags:
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- samtools
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- samtools/bam2fq
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- samtools/bam2fq
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- samtools
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files:
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files:
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- path: output/samtools/test_interleaved.fq.gz
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- path: output/samtools/test_interleaved.fq.gz
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md5sum: 7a57a8ab53dd1d799cca67a85c47ccd9
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md5sum: 7a57a8ab53dd1d799cca67a85c47ccd9
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@ -12,8 +12,8 @@
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- name: samtools bam2fq test_samtools_bam2fq_withsplit
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- name: samtools bam2fq test_samtools_bam2fq_withsplit
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command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_withsplit -c tests/config/nextflow.config
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command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_withsplit -c tests/config/nextflow.config
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tags:
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tags:
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- samtools
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- samtools/bam2fq
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- samtools/bam2fq
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- samtools
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files:
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files:
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- path: output/samtools/test_1.fq.gz
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- path: output/samtools/test_1.fq.gz
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md5sum: 1c84aadcdca10e97be2b5b6ce773f5ed
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md5sum: 1c84aadcdca10e97be2b5b6ce773f5ed
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