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Test --no-name to solve inconsistent checksums

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ljmesi 2022-05-03 15:18:09 +02:00
parent 59d6e6e1dd
commit 5510ea39fe
2 changed files with 3 additions and 3 deletions
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2
modules/samtools/bam2fq/main.nf
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@ -45,7 +45,7 @@ process SAMTOOLS_BAM2FQ {
bam2fq \\ bam2fq \\
$args \\ $args \\
-@ $task.cpus \\ -@ $task.cpus \\
$inputbam | gzip > ${prefix}_interleaved.fq.gz $inputbam | gzip --no-name > ${prefix}_interleaved.fq.gz
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":

4
tests/modules/samtools/bam2fq/test.yml
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@ -1,8 +1,8 @@
- name: samtools bam2fq test_samtools_bam2fq_nosplit - name: samtools bam2fq test_samtools_bam2fq_nosplit
command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_nosplit -c tests/config/nextflow.config command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_nosplit -c tests/config/nextflow.config
tags: tags:
- samtools
- samtools/bam2fq - samtools/bam2fq
- samtools
files: files:
- path: output/samtools/test_interleaved.fq.gz - path: output/samtools/test_interleaved.fq.gz
md5sum: 7a57a8ab53dd1d799cca67a85c47ccd9 md5sum: 7a57a8ab53dd1d799cca67a85c47ccd9
@ -12,8 +12,8 @@
- name: samtools bam2fq test_samtools_bam2fq_withsplit - name: samtools bam2fq test_samtools_bam2fq_withsplit
command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_withsplit -c tests/config/nextflow.config command: nextflow run tests/modules/samtools/bam2fq -entry test_samtools_bam2fq_withsplit -c tests/config/nextflow.config
tags: tags:
- samtools
- samtools/bam2fq - samtools/bam2fq
- samtools
files: files:
- path: output/samtools/test_1.fq.gz - path: output/samtools/test_1.fq.gz
md5sum: 1c84aadcdca10e97be2b5b6ce773f5ed md5sum: 1c84aadcdca10e97be2b5b6ce773f5ed