millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

fix hsmetrics input

Browse source
This commit is contained in:
Matthias De Smet 2022-04-28 13:43:59 +02:00
parent e0a8af8693
commit 55dfe1d8ab
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
subworkflows/nf-core/bam_qc_picard/main.nf
View file

@ -25,7 +25,7 @@ workflow BAM_QC_PICARD {
if (ch_target_interval.isEmpty()) { if (ch_target_interval.isEmpty()) {
log.error("Target interval channel is empty") log.error("Target interval channel is empty")
} }
PICARD_COLLECTHSMETRICS( ch_bam, ch_fasta, ch_bait_interval, ch_target_interval ) PICARD_COLLECTHSMETRICS( ch_bam, ch_fasta, [], ch_bait_interval, ch_target_interval )
ch_versions = ch_versions.mix(PICARD_COLLECTHSMETRICS.out.versions.first()) ch_versions = ch_versions.mix(PICARD_COLLECTHSMETRICS.out.versions.first())
} else { } else {
PICARD_COLLECTWGSMETRICS( ch_bam, ch_fasta ) PICARD_COLLECTWGSMETRICS( ch_bam, ch_fasta )