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fix hsmetrics input

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This commit is contained in:
Matthias De Smet 2022-04-28 13:43:59 +02:00
parent e0a8af8693
commit 55dfe1d8ab
1 changed files with 1 additions and 1 deletions
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subworkflows/nf-core/bam_qc_picard/main.nf
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@ -25,7 +25,7 @@ workflow BAM_QC_PICARD {
if (ch_target_interval.isEmpty()) { if (ch_target_interval.isEmpty()) {
log.error("Target interval channel is empty") log.error("Target interval channel is empty")
} }
PICARD_COLLECTHSMETRICS( ch_bam, ch_fasta, ch_bait_interval, ch_target_interval ) PICARD_COLLECTHSMETRICS( ch_bam, ch_fasta, [], ch_bait_interval, ch_target_interval )
ch_versions = ch_versions.mix(PICARD_COLLECTHSMETRICS.out.versions.first()) ch_versions = ch_versions.mix(PICARD_COLLECTHSMETRICS.out.versions.first())
} else { } else {
PICARD_COLLECTWGSMETRICS( ch_bam, ch_fasta ) PICARD_COLLECTWGSMETRICS( ch_bam, ch_fasta )