diff --git a/.github/filters.yml b/.github/filters.yml
index db826b81..a9dbfc13 100644
--- a/.github/filters.yml
+++ b/.github/filters.yml
@@ -3,27 +3,27 @@ bandage_image:
   - tests/software/bandage/image/**
 
 bcftools_bgzip:
-  - software/bowtie/bgzip/**
+  - software/bcftools/bgzip/**
   - tests/software/bcftools/bgzip**
 
 bcftools_consensus:
-  - software/bowtie/consesus/**
+  - software/bcftools/consesus/**
   - tests/software/bcftools/consesus**
 
 bcftools_filter:
-  - software/bowtie/filter/**
+  - software/bcftools/filter/**
   - tests/software/bcftools/filter**
 
 bcftools_isec:
-  - software/bowtie/isec/**
+  - software/bcftools/isec/**
   - tests/software/bcftools/isec**
 
 bcftools_stats:
-  - software/bowtie/stats/**
+  - software/bcftools/stats/**
   - tests/software/bcftools/stats**
 
 bcftools_tabix:
-  - software/bowtie/tabix/**
+  - software/bcftools/tabix/**
   - tests/software/bcftools/tabix**
 
 bedtools_complement: