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Edit the location of multiqc_config file

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This commit is contained in:
Abhinav Sharma 2020-12-04 22:31:35 +05:30
parent 27b4b29976
commit 5949bfc15b
2 changed files with 1 additions and 1 deletions
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2
tests/software/multiqc/main.nf
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@ -5,7 +5,7 @@ nextflow.enable.dsl = 2
include { MULTIQC } from '../../../software/multiqc/main.nf' addParams(options: [publish_dir: 'test_multiqc']) include { MULTIQC } from '../../../software/multiqc/main.nf' addParams(options: [publish_dir: 'test_multiqc'])
include { test_paired_end } from '../fastqc/main.nf' addParams(options: [publish_dir: 'test_paired_end']) include { test_paired_end } from '../fastqc/main.nf' addParams(options: [publish_dir: 'test_paired_end'])
ch_multiqc_config = file("$launchDir/tests/data/multiqc/multiqc_config.yaml", checkIfExists: true) ch_multiqc_config = file("$launchDir/tests/software/multiqc/multiqc_config.yml", checkIfExists: true)
ch_multiqc_custom_config = params.multiqc_config ? Channel.fromPath(params.multiqc_config) : Channel.empty() ch_multiqc_custom_config = params.multiqc_config ? Channel.fromPath(params.multiqc_config) : Channel.empty()
workflow test_multiqc { workflow test_multiqc {

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tests/data/multiqc/multiqc_config.yaml → tests/software/multiqc/multiqc_config.yml
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