millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-20 23:32:05 +00:00
Code Issues Releases Packages Activity

bump bclconvert version (#1806)

Browse source
This commit is contained in:
Matthias De Smet 2022-06-24 07:14:42 +02:00 committed by GitHub
parent a7193dc628
commit 5e2325956c
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
3 changed files with 5 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
modules/bclconvert/main.nf
View file

@ -5,7 +5,7 @@ process BCLCONVERT {
if (params.enable_conda) {
exit 1, "Conda environments cannot be used when using bcl-convert. Please use docker or singularity containers."
}
container "nfcore/bclconvert:3.9.3"
container "nfcore/bclconvert:3.10.5"
input:
tuple val(meta), path(samplesheet), path(run_dir)
@ -13,7 +13,7 @@ process BCLCONVERT {
output:
tuple val(meta), path("**[!Undetermined]_S*_L00?_R?_00?.fastq.gz") ,emit: fastq
tuple val(meta), path("**_S*_L00?_I?_00?.fastq.gz") ,optional:true ,emit: fastq_idx
tuple val(meta), path("Undetermined_S0_L00?_R?_00?.fastq.gz") ,emit: undetermined
tuple val(meta), path("Undetermined_S0_L00?_R?_00?.fastq.gz") ,optional:true ,emit: undetermined
tuple val(meta), path("Undetermined_S0_L00?_I?_00?.fastq.gz") ,optional:true, emit: undetermined_idx
tuple val(meta), path("Reports") ,emit: reports
tuple val(meta), path("Logs") ,emit: logs

2
modules/bclconvert/meta.yml
View file

@ -39,7 +39,7 @@ output:
pattern: "**_S*_L00?_I?_00?.fastq.gz"
- undetermined:
type: file
description: Undetermined sample FASTQ files
description: Optional undetermined sample FASTQ files
pattern: "Undetermined_S0_L00?_R?_00?.fastq.gz"
- undetermined_idx:
type: file

4
tests/modules/bclconvert/test.yml
View file

@ -10,7 +10,7 @@
- path: output/bclconvert/Reports/Adapter_Metrics.csv
md5sum: 989240b8840b2169ac1061f952c90f6c
- path: output/bclconvert/Reports/Demultiplex_Stats.csv
md5sum: bb2ed9c6b46e03fbc060efd2c75398b0
md5sum: 93949a8cd96f907d83e0808c1ec2a04b
- path: output/bclconvert/Reports/IndexMetricsOut.bin
md5sum: 9e688c58a5487b8eaf69c9e1005ad0bf
- path: output/bclconvert/Reports/Index_Hopping_Counts.csv
@ -26,7 +26,7 @@
- path: output/bclconvert/Reports/fastq_list.csv
md5sum: 05bc84f51840f5754cfb8381b36f2cb0
- path: output/bclconvert/Sample1_S1_L001_R1_001.fastq.gz
md5sum: 883037281293a2ec4995d34257f19866
md5sum: 57d2f3b389656245f923351d3e3d2d65
- path: output/bclconvert/Undetermined_S0_L001_R1_001.fastq.gz
md5sum: a4745abc5e7fdb89cc6df3069f3c6e69
- path: output/bclconvert/flowcell/InterOp/ControlMetricsOut.bin