Reduce resource requests (#2021)

use process_single

Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>

modules/bcftools/stats/main.nf

@@ -1,6 +1,6 @@
 process BCFTOOLS_STATS {
     tag "$meta.id"
-    label 'process_medium'
+    label 'process_single'
 
     conda (params.enable_conda ? "bioconda::bcftools=1.15.1" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/custom/dumpsoftwareversions/main.nf

@@ -1,5 +1,5 @@
 process CUSTOM_DUMPSOFTWAREVERSIONS {
-    label 'process_low'
+    label 'process_single'
 
     // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container
     conda (params.enable_conda ? 'bioconda::multiqc=1.13a' : null)

modules/manta/germline/main.nf

@@ -1,6 +1,6 @@
 process MANTA_GERMLINE {
     tag "$meta.id"
-    label 'process_high'
+    label 'process_medium'
 
     conda (params.enable_conda ? "bioconda::manta=1.6.0" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/manta/somatic/main.nf

@@ -1,6 +1,6 @@
 process MANTA_SOMATIC {
     tag "$meta.id"
-    label 'process_high'
+    label 'process_medium'
 
     conda (params.enable_conda ? "bioconda::manta=1.6.0" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/manta/tumoronly/main.nf

@@ -1,6 +1,6 @@
 process MANTA_TUMORONLY {
     tag "$meta.id"
-    label 'process_high'
+    label 'process_medium'
 
     conda (params.enable_conda ? "bioconda::manta=1.6.0" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/samtools/convert/main.nf

@@ -1,6 +1,6 @@
 process SAMTOOLS_CONVERT {
     tag "$meta.id"
-    label 'process_medium'
+    label 'process_low'
 
     conda (params.enable_conda ? "bioconda::samtools=1.15.1" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/samtools/faidx/main.nf

@@ -1,6 +1,6 @@
 process SAMTOOLS_FAIDX {
     tag "$fasta"
-    label 'process_low'
+    label 'process_single'
 
     conda (params.enable_conda ? "bioconda::samtools=1.15.1" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/samtools/mpileup/main.nf

@@ -1,6 +1,6 @@
 process SAMTOOLS_MPILEUP {
     tag "$meta.id"
-    label 'process_medium'
+    label 'process_single'
 
     conda (params.enable_conda ? "bioconda::samtools=1.15.1" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/samtools/view/main.nf

@@ -1,6 +1,6 @@
 process SAMTOOLS_VIEW {
     tag "$meta.id"
-    label 'process_medium'
+    label 'process_low'
 
     conda (params.enable_conda ? "bioconda::samtools=1.15.1" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/strelka/germline/main.nf

@@ -1,6 +1,6 @@
 process STRELKA_GERMLINE {
     tag "$meta.id"
-    label 'process_high'
+    label 'process_medium'
 
     conda (params.enable_conda ? "bioconda::strelka=2.9.10" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/strelka/somatic/main.nf

@@ -1,6 +1,6 @@
 process STRELKA_SOMATIC {
     tag "$meta.id"
-    label 'process_high'
+    label 'process_medium'
 
     conda (params.enable_conda ? "bioconda::strelka=2.9.10" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/tabix/bgzip/main.nf

@@ -1,6 +1,6 @@
 process TABIX_BGZIP {
     tag "$meta.id"
-    label 'process_low'
+    label 'process_single'
 
     conda (params.enable_conda ? 'bioconda::tabix=1.11' : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/tabix/bgziptabix/main.nf

@@ -1,6 +1,6 @@
 process TABIX_BGZIPTABIX {
     tag "$meta.id"
-    label 'process_medium'
+    label 'process_single'
 
     conda (params.enable_conda ? 'bioconda::tabix=1.11' : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/tabix/tabix/main.nf

@@ -1,6 +1,6 @@
 process TABIX_TABIX {
     tag "$meta.id"
-    label 'process_medium'
+    label 'process_single'
 
     conda (params.enable_conda ? 'bioconda::tabix=1.11' : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/untar/main.nf

@@ -1,6 +1,6 @@
 process UNTAR {
     tag "$archive"
-    label 'process_low'
+    label 'process_single'
 
     conda (params.enable_conda ? "conda-forge::sed=4.7" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/unzip/main.nf

@@ -1,6 +1,6 @@
 process UNZIP {
     tag "$archive"
-    label 'process_low'
+    label 'process_single'
 
     conda (params.enable_conda ? "bioconda::p7zip=15.09" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?

modules/vcftools/main.nf

@@ -1,6 +1,6 @@
 process VCFTOOLS {
     tag "$meta.id"
-    label 'process_medium'
+    label 'process_single'
 
     conda (params.enable_conda ? "bioconda::vcftools=0.1.16" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?