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Add tests

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This commit is contained in:
FriederikeHanssen 2021-02-17 17:25:41 +01:00
parent 2654c52ed1
commit 5f9aa7264e
2 changed files with 40 additions and 0 deletions
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21
tests/software/seqkit/split2/main.nf Normal file
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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { SEQKIT_SPLIT2 } from '../../../../software/SEQKIT/SPLIT2/main.nf' addParams( options: [:] )
workflow test_seqkit_split2_single_end {
def input = []
input = [ [ id:'test', single_end:true ], // meta map
file("${launchDir}/tests/data/dna/SRR396636_R1.fastq.gz", checkIfExists: true) ]
SEQKIT_SPLIT2 ( input )
}
workflow test_seqkit_split2_paired_end {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
file("${launchDir}/tests/data/dna/SRR396636_*", checkIfExists: true) ]
SEQKIT_SPLIT2 ( input )
}

19
tests/software/seqkit/split2/test.yml Normal file
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- name: seqkit split2 single-end
command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_single_end -c tests/config/nextflow.config
tags:
- seqkit
- seqkit_split2
- seqkit_split2_single_end
files:
- path: output/seqkit/
md5sum: a41bfadacd2eeef1d31e05c135cc4f4e
- name: seqkit split2 paired-end
command: nextflow run ./tests/software/seqkit/split2 -entry test_seqkit_split2_paired_end -c tests/config/nextflow.config
tags:
- seqkit
- seqkit_split2
- seqkit_split2_paired_end
files:
- path: output/seqkit/
md5sum: a41bfadacd2eeef1d31e05c135cc4f4e