chore(codeowners): Add module owners

This will default to any place in the modules that has that folder name.
So it will pick up the module and the tests.

.github/CODEOWNERS

@@ -1,5 +1,78 @@
-# Lines starting with '#' are comments.
-# Each line is a file pattern followed by one or more owners.
+###########
+# Modules #
+###########
 
-# **/bwa/** @drpatelh @maxulysse
-**/fastqc/**  @drpatelh @grst @ewels @FelixKrueger
+# BWA
+bwa/ @drpatelh
+bwa/index @maxulysse
+bwa/index @jeremy1805
+
+# deeptools
+# TODO
+
+# FastQC
+fastqc/ @drpatelh @grst @ewels @FelixKrueger
+
+# gffread
+# TODO
+
+# hisat2
+# TODO
+
+# homer
+# TODO
+
+# macs2
+# TODO
+
+# multiqc
+multiqc @abhi18av @bunop @drpatelh
+
+# phantompeakqualtools
+# TODO
+
+# picard
+picard/ @drpatelh
+
+# preseq
+# TODO
+
+# qualimap
+# TODO
+
+# rsem
+# TODO
+
+# rseqc
+# TODO
+
+# salmon
+# TODO
+
+# samtools
+samtools/flagstat @drpatelh
+samtools/idexstats @drpatelh
+samtools/indes @drpatelh @ewels
+samtools/sort @drpatelh @ewels
+samtools/stats @drpatelh
+
+# sortmerna
+# TODO
+
+# star
+# TODO
+
+# stringtie
+# TODO
+
+# subread
+# TODO
+
+# trimgalore
+trimgalore/ @drpatelh @ewels @FelixKrueger
+
+# ucsc
+# TODO
+
+# umitools
+# TODO