From 601c6e2023880f46ada9e9ac19fee1c25bd56d1e Mon Sep 17 00:00:00 2001 From: Mahesh Binzer-Panchal Date: Wed, 2 Feb 2022 17:31:32 +0100 Subject: [PATCH] Update gitpod config to use nf-core gitpod image and include extensions. (#1253) --- .gitpod.yml | 22 +++++++++++++--------- 1 file changed, 13 insertions(+), 9 deletions(-) diff --git a/.gitpod.yml b/.gitpod.yml index 6fe79af6..289c86e5 100644 --- a/.gitpod.yml +++ b/.gitpod.yml @@ -1,10 +1,14 @@ -# List the start up tasks. Learn more https://www.gitpod.io/docs/config-start-tasks/ -tasks: - - name: Install Nextflow - init: | - curl -s https://get.nextflow.io | bash - sudo mv nextflow /usr/local/bin +image: nfcore/gitpod:latest - - name: Install pytest-workflow - init: | - pip install pytest-workflow +vscode: + extensions: # based on nf-core.nf-core-extensionpack + - codezombiech.gitignore # Language support for .gitignore files + # - cssho.vscode-svgviewer # SVG viewer + - davidanson.vscode-markdownlint # Markdown/CommonMark linting and style checking for Visual Studio Code + - eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed + - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files + - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar + - mechatroner.rainbow-csv # Highlight columns in csv files in different colors + # - nextflow.nextflow # Nextflow syntax highlighting + - oderwat.indent-rainbow # Highlight indentation level + - streetsidesoftware.code-spell-checker # Spelling checker for source code