Merge pull request #1694 from SusiJo/cnvkit/reference

Add prefix to cnvkit/reference

modules/cnvkit/reference/main.nf

@@ -21,13 +21,15 @@ process CNVKIT_REFERENCE {
 
     script:
     def args = task.ext.args ?: ''
+    def prefix = task.ext.prefix ?: targets.BaseName
+
     """
     cnvkit.py \\
         reference \\
         --fasta $fasta \\
         --targets $targets \\
         --antitargets $antitargets \\
-        --output reference.cnn \\
+        --output ${prefix}.reference.cnn \\
         $args
 
     cat <<-END_VERSIONS > versions.yml

tests/modules/cnvkit/reference/test.yml

@@ -4,5 +4,5 @@
     - cnvkit/reference
     - cnvkit
   files:
-    - path: output/cnvkit/reference.cnn
+    - path: output/cnvkit/multi_intervals.reference.cnn
       md5sum: 7c4a7902f5ab101b1f9d6038d331b3d9