From 60d8bd7c04c190d920535f13f1d1f5ae1708d203 Mon Sep 17 00:00:00 2001 From: Michael L Heuer Date: Mon, 20 Sep 2021 13:59:05 -0500 Subject: [PATCH] Update pangolin to 3.1.11 (#721) * Update pangolin to 3.1.11. * Update md5sum for test.pangolin.csv. --- modules/pangolin/main.nf | 6 +++--- tests/modules/pangolin/test.yml | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/modules/pangolin/main.nf b/modules/pangolin/main.nf index d1417990..5639dd00 100644 --- a/modules/pangolin/main.nf +++ b/modules/pangolin/main.nf @@ -11,11 +11,11 @@ process PANGOLIN { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? 'bioconda::pangolin=3.1.7' : null) + conda (params.enable_conda ? 'bioconda::pangolin=3.1.11' : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container 'https://depot.galaxyproject.org/singularity/pangolin:3.1.7--pyhdfd78af_0' + container 'https://depot.galaxyproject.org/singularity/pangolin:3.1.11--pyhdfd78af_1' } else { - container 'quay.io/biocontainers/pangolin:3.1.7--pyhdfd78af_0' + container 'quay.io/biocontainers/pangolin:3.1.11--pyhdfd78af_1' } input: diff --git a/tests/modules/pangolin/test.yml b/tests/modules/pangolin/test.yml index 2b6b7553..5fb5e79e 100644 --- a/tests/modules/pangolin/test.yml +++ b/tests/modules/pangolin/test.yml @@ -4,4 +4,4 @@ - pangolin files: - path: ./output/pangolin/test.pangolin.csv - md5sum: 8daea6ca9fee7b747080d4d2b28a83d7 + md5sum: 4eaff46b5b11cd59fb44d4e8e7c4945e