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Merge branch 'master' into fix-filtlong

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James A. Fellows Yates 2022-05-31 20:25:16 +02:00 committed by GitHub
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1
modules/gatk4/mergevcfs/main.nf
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@ -13,6 +13,7 @@ process GATK4_MERGEVCFS {
output: output:
tuple val(meta), path('*.vcf.gz'), emit: vcf tuple val(meta), path('*.vcf.gz'), emit: vcf
tuple val(meta), path("*.tbi") , emit: tbi
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:

5
modules/gatk4/mergevcfs/meta.yml
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@ -35,6 +35,11 @@ output:
type: file type: file
description: merged vcf file description: merged vcf file
pattern: "*.vcf.gz" pattern: "*.vcf.gz"
- tbi:
type: file
description: index files for the merged vcf files
pattern: "*.tbi"
- versions: - versions:
type: file type: file
description: File containing software versions description: File containing software versions

2
tests/modules/gatk4/mergevcfs/test.yml
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@ -6,6 +6,8 @@
files: files:
- path: output/gatk4/test.vcf.gz - path: output/gatk4/test.vcf.gz
md5sum: 5b289bda88d3a3504f2e19ee8cff177c md5sum: 5b289bda88d3a3504f2e19ee8cff177c
- path: output/gatk4/test.vcf.gz.tbi
md5sum: a81673763b13086cfce9a23e72a35a16
- path: output/gatk4/versions.yml - path: output/gatk4/versions.yml
- name: gatk4 mergevcfs test_gatk4_mergevcfs_no_dict - name: gatk4 mergevcfs test_gatk4_mergevcfs_no_dict