millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-20 23:32:05 +00:00
Code Issues Releases Packages Activity

fix: actually do the tests for multiple files (#1058)

Browse source
This commit is contained in:
Maxime U. Garcia 2021-11-10 16:26:34 +01:00 committed by GitHub
parent 24707f2144
commit 64006e239a
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 5 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
tests/modules/gatk4/markduplicates/main.nf
View file

@ -14,9 +14,9 @@ workflow test_gatk4_markduplicates {
workflow test_gatk4_markduplicates_multiple_bams {
input = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)
]
[ file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)
] ]
GATK4_MARKDUPLICATES ( input )
}

4
tests/modules/gatk4/markduplicates/test.yml
View file

@ -17,7 +17,7 @@
- gatk4
files:
- path: output/gatk4/test.bai
md5sum: 93cebe29e7cca2064262b739235cca9b
md5sum: d12be29abba5865b7da0cd23f1a84e86
- path: output/gatk4/test.bam
md5sum: dcd6f584006b04141fb787001a8ecacc
md5sum: e988925ed850f8d9d966aa6689ae57de
- path: output/gatk4/test.metrics