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fix: actually do the tests for multiple files (#1058)

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Maxime U. Garcia 2021-11-10 16:26:34 +01:00 committed by GitHub
parent 24707f2144
commit 64006e239a
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2 changed files with 5 additions and 5 deletions
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4
tests/modules/gatk4/markduplicates/main.nf
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@ -14,9 +14,9 @@ workflow test_gatk4_markduplicates {
workflow test_gatk4_markduplicates_multiple_bams { workflow test_gatk4_markduplicates_multiple_bams {
input = [ [ id:'test', single_end:false ], // meta map input = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true), [ file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true) file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)
] ] ]
GATK4_MARKDUPLICATES ( input ) GATK4_MARKDUPLICATES ( input )
} }

4
tests/modules/gatk4/markduplicates/test.yml
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@ -17,7 +17,7 @@
- gatk4 - gatk4
files: files:
- path: output/gatk4/test.bai - path: output/gatk4/test.bai
md5sum: 93cebe29e7cca2064262b739235cca9b md5sum: d12be29abba5865b7da0cd23f1a84e86
- path: output/gatk4/test.bam - path: output/gatk4/test.bam
md5sum: dcd6f584006b04141fb787001a8ecacc md5sum: e988925ed850f8d9d966aa6689ae57de
- path: output/gatk4/test.metrics - path: output/gatk4/test.metrics