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added tmp-dir + alignment correction
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1 changed files with 2 additions and 1 deletions
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@ -15,7 +15,7 @@ process GATK4_SPLITINTERVALS {
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output:
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tuple val(meta), path("**.interval_list"), emit: split_intervals
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path "versions.yml" , emit: versions
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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@ -37,6 +37,7 @@ process GATK4_SPLITINTERVALS {
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--output ${prefix} \\
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--intervals $intervals \\
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$reference \\
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--tmp-dir . \\
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$args
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cat <<-END_VERSIONS > versions.yml
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