added tmp-dir + alignment correction

This commit is contained in:
Nicolas Vannieuwkerke 2022-05-13 14:35:22 +02:00
parent a72f06dfe8
commit 6427eeeca0

View file

@ -15,7 +15,7 @@ process GATK4_SPLITINTERVALS {
output:
tuple val(meta), path("**.interval_list"), emit: split_intervals
path "versions.yml" , emit: versions
path "versions.yml" , emit: versions
when:
task.ext.when == null || task.ext.when
@ -37,6 +37,7 @@ process GATK4_SPLITINTERVALS {
--output ${prefix} \\
--intervals $intervals \\
$reference \\
--tmp-dir . \\
$args
cat <<-END_VERSIONS > versions.yml