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Remove old code

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drpatelh 2020-08-07 12:19:28 +01:00
parent 30256d8e81
commit 6522b04ee3
1 changed files with 0 additions and 31 deletions
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31
software/trimgalore/test/main.nf
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@ -33,34 +33,3 @@ workflow {
test_single_end() test_single_end()
test_paired_end() test_paired_end()
} }
// #!/usr/bin/env nextflow
// nextflow.preview.dsl=2
//
// params.outdir = "." // gets set in the nextflow.config files (to './results/trim_galore')
// params.verbose = false
// params.trim_galore_args = ''
// // trim_galore_args are best passed into the workflow in the following manner, e.g.:
// // --trim_galore_args="--clip_r1 10 --clip_r2 15 -j 2"
//
// if (params.verbose){
// println ("[WORKFLOW] TRIM GALORE ARGS: " + params.trim_galore_args)
// }
//
// // TODO: check the output files in some way
// // include '../../../tests/functions/check_process_outputs.nf'
// include '../main.nf' // params (clip_r1: 6, clip_r2: 10) // how to pass additional parameters
//
// ch_read_files = Channel
// .fromFilePairs('../../../test-datasets/test*{1,2}.fastq.gz',size:-1)
// // .view() // to check whether the input channel works
//
// workflow {
//
// main:
// TRIM_GALORE (ch_read_files, params.outdir, params.trim_galore_args, params.verbose)
//
// }