From 654c6225f01de7a6ab916886df4b4bc60ff73320 Mon Sep 17 00:00:00 2001
From: Edmund Miller <edmund.a.miller@protonmail.com>
Date: Tue, 2 Feb 2021 15:38:51 -0600
Subject: [PATCH] ci: Setup multiple profiles for testing

Added conda and singularity
---
 .github/workflows/pytest-workflow.yml | 16 +++++++++++++++-
 1 file changed, 15 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/pytest-workflow.yml b/.github/workflows/pytest-workflow.yml
index b3775870..50e8c53c 100644
--- a/.github/workflows/pytest-workflow.yml
+++ b/.github/workflows/pytest-workflow.yml
@@ -24,6 +24,7 @@ jobs:
       matrix:
         nxf_version: ['20.11.0-edge']
         tags: ['${{ fromJson(needs.changes.outputs.modules) }}']
+        profile: ['docker', 'singularity', 'conda' ]
     env:
       NXF_ANSI_LOG: false
     steps:
@@ -59,9 +60,22 @@ jobs:
       - name: Install dependencies
         run: python -m pip install --upgrade pip pytest-workflow
 
+      - name: Set up Singularity
+        if: matrix.profile == 'singularity'
+        uses: eWaterCycle/setup-singularity@v5
+        with:
+          singularity-version: 3.6.4
+
+      - name: Setup conda
+        if: matrix.profile == 'conda'
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+
       # Test the module
       - name: Run pytest-workflow
-        run: PROFILE=docker pytest --tag ${{ matrix.tags }} --symlink --wt 2
+        run: PROFILE=${{ matrix.profile }} pytest --tag ${{ matrix.tags }} --symlink --wt 2
 
       - name: Upload logs on failure
         if: ${{ failure() }}