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Update pytest outputs

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This commit is contained in:
Mahesh Binzer-Panchal 2022-05-09 12:54:31 +00:00
parent ce97c87b5d
commit 6621768550
3 changed files with 9 additions and 15 deletions
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4
modules/meryl/unionsum/main.nf
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@ -11,7 +11,7 @@ process MERYL_UNIONSUM {
tuple val(meta), path(meryl_dbs) tuple val(meta), path(meryl_dbs)
output: output:
tuple val(meta), path("*.meryldb"), emit: meryl_db tuple val(meta), path("*.unionsum.meryldb"), emit: meryl_db
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:
@ -24,7 +24,7 @@ process MERYL_UNIONSUM {
meryl union-sum \\ meryl union-sum \\
threads=$task.cpus \\ threads=$task.cpus \\
$args \\ $args \\
output ${prefix}.meryl \\ output ${prefix}.unionsum.meryldb \\
$meryl_dbs $meryl_dbs
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml

2
tests/modules/meryl/unionsum/main.nf
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@ -8,7 +8,7 @@ include { MERYL_UNIONSUM } from '../../../../modules/meryl/unionsum/main.nf'
workflow test_meryl_unionsum { workflow test_meryl_unionsum {
input = [ input = [
[ id:'test' ], // meta map [ id:'test', single_end: false ], // meta map
[ [
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true), file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)

16
tests/modules/meryl/unionsum/test.yml
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@ -1,14 +1,8 @@
## TODO nf-core: Please run the following command to build this file: - name: meryl unionsum test_meryl_unionsum
# nf-core modules create-test-yml meryl/unionsum command: nextflow run tests/modules/meryl/unionsum -entry test_meryl_unionsum -c tests/config/nextflow.config
- name: "meryl unionsum"
command: nextflow run ./tests/modules/meryl/unionsum -entry test_meryl_unionsum -c ./tests/config/nextflow.config -c ./tests/modules/meryl/unionsum/nextflow.config
tags: tags:
- "meryl" - meryl
# - meryl/unionsum
- "meryl/unionsum"
#
files: files:
- path: "output/meryl/test.bam"
md5sum: e667c7caad0bc4b7ac383fd023c654fc
- path: output/meryl/versions.yml - path: output/meryl/versions.yml
md5sum: a01fe51bc4c6a3a6226fbf77b2c7cf3b md5sum: c864aa98f55b9ec7fa1fb2716ec736dd