millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

Update README.md

Browse source 
Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
This commit is contained in:
Gregor Sturm 2020-07-16 16:48:47 +02:00 committed by GitHub
parent f95f234562
commit 6634a37bfd
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
README.md
View file

@ -100,7 +100,9 @@ The key words "MUST", "MUST NOT", "SHOULD", etc. are to be interpreted as descri
### Software requirements
- Software requirements SHOULD be declared in a conda `environment.yml` file, including exact version numbers. Additionally, there MUST be a `Dockerfile` that containerizes the environment, or packages the software if conda is not available.
- Docker containers MUST BE identified by their `sha256(Dockerfile + environment.yml)`. Like that, identical containers are implicitly re-used across subcommands.
- Docker containers MUST BE identified by their `sha256(Dockerfile + environment.yml)`.
- Each module must have it's own `Dockerfile` and `environment.yml` file
- Care should be taken to maintain identical files for subcommands that use the same software. Then the hash tag will be the same and they will be implicitly re-used across subcommands.
### File formats
- Wherever possible, [CRAM](https://en.wikipedia.org/wiki/CRAM_(file_format)) files SHOULD be used over BAM files.