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Merge pull request #163 from JoseEspinosa/fix_conda_build

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Add conda build id
This commit is contained in:
Harshil Patel 2021-02-09 22:47:15 +00:00 committed by GitHub
commit 6765db81be
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GPG key ID: 4AEE18F83AFDEB23
7 changed files with 7 additions and 7 deletions
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2
software/bcftools/bgzip/main.nf
View file

@ -10,7 +10,7 @@ process BCFTOOLS_BGZIP {
mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
conda (params.enable_conda ? "bioconda::bcftools=1.11" : null)
conda (params.enable_conda ? "bioconda::bcftools=1.11=h7c999a4_0" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/bcftools:1.11--h7c999a4_0"
} else {

2
software/bcftools/filter/main.nf
View file

@ -10,7 +10,7 @@ process BCFTOOLS_FILTER {
mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
conda (params.enable_conda ? "bioconda::bcftools=1.11" : null)
conda (params.enable_conda ? "bioconda::bcftools=1.11=h7c999a4_0" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/bcftools:1.11--h7c999a4_0"
} else {

2
software/bcftools/isec/main.nf
View file

@ -10,7 +10,7 @@ process BCFTOOLS_ISEC {
mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
conda (params.enable_conda ? "bioconda::bcftools=1.11" : null)
conda (params.enable_conda ? "bioconda::bcftools=1.11=h7c999a4_0" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/bcftools:1.11--h7c999a4_0"
} else {

2
software/bcftools/stats/main.nf
View file

@ -10,7 +10,7 @@ process BCFTOOLS_STATS {
mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
conda (params.enable_conda ? "bioconda::bcftools=1.11" : null)
conda (params.enable_conda ? "bioconda::bcftools=1.11=h7c999a4_0" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/bcftools:1.11--h7c999a4_0"
} else {

2
software/bcftools/tabix/main.nf
View file

@ -10,7 +10,7 @@ process BCFTOOLS_TABIX {
mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
conda (params.enable_conda ? "bioconda::bcftools=1.11" : null)
conda (params.enable_conda ? "bioconda::bcftools=1.11=h7c999a4_0" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/bcftools:1.11--h7c999a4_0"
} else {

2
software/blast/blastn/main.nf
View file

@ -11,7 +11,7 @@ process BLAST_BLASTN {
mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
conda (params.enable_conda ? 'bioconda::blast=2.10.1' : null)
conda (params.enable_conda ? 'bioconda::blast=2.10.1=pl526he19e7b1_3' : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container 'https://depot.galaxyproject.org/singularity/blast:2.10.1--pl526he19e7b1_3'
} else {

2
software/blast/makeblastdb/main.nf
View file

@ -11,7 +11,7 @@ process BLAST_MAKEBLASTDB {
mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:'') }
conda (params.enable_conda ? 'bioconda::blast=2.10.1' : null)
conda (params.enable_conda ? 'bioconda::blast=2.10.1=pl526he19e7b1_3' : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container 'https://depot.galaxyproject.org/singularity/blast:2.10.1--pl526he19e7b1_3'
} else {