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Fix tests

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This commit is contained in:
James Fellows Yates 2022-05-02 12:29:00 +02:00
parent 58e5c6aece
commit 67b074382e
4 changed files with 14 additions and 16 deletions
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14
modules/diamond/blastp/main.nf
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@ -14,13 +14,13 @@ process DIAMOND_BLASTP {
val blast_columns val blast_columns
output: output:
tuple val(meta), path('*.{blast}'), optional: true, emit: blast tuple val(meta), path('*.blast'), optional: true, emit: blast
tuple val(meta), path('*.{xml}') , optional: true, emit: xml tuple val(meta), path('*.xml') , optional: true, emit: xml
tuple val(meta), path('*.{txt}') , optional: true, emit: txt tuple val(meta), path('*.txt') , optional: true, emit: txt
tuple val(meta), path('*.{daa}') , optional: true, emit: daa tuple val(meta), path('*.daa') , optional: true, emit: daa
tuple val(meta), path('*.{sam}') , optional: true, emit: sam tuple val(meta), path('*.sam') , optional: true, emit: sam
tuple val(meta), path('*.{tsv}') , optional: true, emit: tsv tuple val(meta), path('*.tsv') , optional: true, emit: tsv
tuple val(meta), path('*.{paf}') , optional: true, emit: paf tuple val(meta), path('*.paf') , optional: true, emit: paf
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:

14
modules/diamond/blastx/main.nf
View file

@ -14,13 +14,13 @@ process DIAMOND_BLASTX {
val blast_columns val blast_columns
output: output:
tuple val(meta), path('*.{blast}'), optional: true, emit: blast tuple val(meta), path('*.blast'), optional: true, emit: blast
tuple val(meta), path('*.{xml}') , optional: true, emit: xml tuple val(meta), path('*.xml') , optional: true, emit: xml
tuple val(meta), path('*.{txt}') , optional: true, emit: txt tuple val(meta), path('*.txt') , optional: true, emit: txt
tuple val(meta), path('*.{daa}') , optional: true, emit: daa tuple val(meta), path('*.daa') , optional: true, emit: daa
tuple val(meta), path('*.{sam}') , optional: true, emit: sam tuple val(meta), path('*.sam') , optional: true, emit: sam
tuple val(meta), path('*.{tsv}') , optional: true, emit: tsv tuple val(meta), path('*.tsv') , optional: true, emit: tsv
tuple val(meta), path('*.{paf}') , optional: true, emit: paf tuple val(meta), path('*.paf') , optional: true, emit: paf
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:

1
tests/modules/diamond/blastp/test.yml
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@ -5,7 +5,6 @@
- diamond - diamond
files: files:
- path: output/diamond/test.diamond_blastp.txt - path: output/diamond/test.diamond_blastp.txt
md5sum: 2515cf88590afa32356497e79a51fce9
- path: output/diamond/versions.yml - path: output/diamond/versions.yml
- name: diamond blastp test_diamond_blastp_daa - name: diamond blastp test_diamond_blastp_daa

1
tests/modules/diamond/blastx/test.yml
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@ -5,7 +5,6 @@
- diamond/blastx - diamond/blastx
files: files:
- path: output/diamond/test.diamond_blastx.txt - path: output/diamond/test.diamond_blastx.txt
md5sum: eb2aebfa1cb42fcb2121c65528663307
- path: output/diamond/versions.yml - path: output/diamond/versions.yml
- name: diamond blastx test_diamond_blastx_daa - name: diamond blastx test_diamond_blastx_daa