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Update tiddit to 3.1.0 (#1767)

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* update TIDDIT to 3.1.0

* update VCF too as version is in file
This commit is contained in:
Maxime U. Garcia 2022-06-13 16:24:34 +02:00 committed by GitHub
parent 8f199c4fa4
commit 680b6c5b04
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2 changed files with 5 additions and 5 deletions
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6
modules/tiddit/sv/main.nf
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@ -2,10 +2,10 @@ process TIDDIT_SV {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::tiddit=3.0.0" : null) conda (params.enable_conda ? "bioconda::tiddit=3.1.0" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/tiddit:3.0.0--py39h59fae87_1' : 'https://depot.galaxyproject.org/singularity/tiddit:3.1.0--py39h59fae87_1' :
'quay.io/biocontainers/tiddit:3.0.0--py39h59fae87_1' }" 'quay.io/biocontainers/tiddit:3.1.0--py39h59fae87_1' }"
input: input:
tuple val(meta), path(input), path(input_index) tuple val(meta), path(input), path(input_index)

4
tests/modules/tiddit/sv/test.yml
View file

@ -7,7 +7,7 @@
- path: output/tiddit/test.ploidies.tab - path: output/tiddit/test.ploidies.tab
md5sum: 6319d3611f7b6b94425a184d274b3dfc md5sum: 6319d3611f7b6b94425a184d274b3dfc
- path: output/tiddit/test.vcf - path: output/tiddit/test.vcf
md5sum: 41d3f8746f0420f894104321b7e64f67 md5sum: 157907671297c34bacfd3e73eff9bbdf
- name: tiddit sv test_tiddit_sv_cram - name: tiddit sv test_tiddit_sv_cram
command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
@ -18,4 +18,4 @@
- path: output/tiddit/test.ploidies.tab - path: output/tiddit/test.ploidies.tab
md5sum: f1162a940ddc8b963f6e0e506bb5c136 md5sum: f1162a940ddc8b963f6e0e506bb5c136
- path: output/tiddit/test.vcf - path: output/tiddit/test.vcf
md5sum: 34db59578991285d6b62dc1500272fca md5sum: 56687eeffa452f78f18d54a69dd17c78