diff --git a/.github/workflows/bwa_index.yml b/.github/workflows/software/bwa_index.yml similarity index 100% rename from .github/workflows/bwa_index.yml rename to .github/workflows/software/bwa_index.yml diff --git a/.github/workflows/bwa_mem.yml b/.github/workflows/software/bwa_mem.yml similarity index 100% rename from .github/workflows/bwa_mem.yml rename to .github/workflows/software/bwa_mem.yml diff --git a/.github/workflows/fastqc.yml b/.github/workflows/software/fastqc.yml similarity index 100% rename from .github/workflows/fastqc.yml rename to .github/workflows/software/fastqc.yml diff --git a/.github/workflows/picard_collectmultiplemetrics.yml b/.github/workflows/software/picard_collectmultiplemetrics.yml similarity index 100% rename from .github/workflows/picard_collectmultiplemetrics.yml rename to .github/workflows/software/picard_collectmultiplemetrics.yml diff --git a/.github/workflows/picard_markduplicates.yml b/.github/workflows/software/picard_markduplicates.yml similarity index 100% rename from .github/workflows/picard_markduplicates.yml rename to .github/workflows/software/picard_markduplicates.yml diff --git a/.github/workflows/picard_mergesamfiles.yml b/.github/workflows/software/picard_mergesamfiles.yml similarity index 100% rename from .github/workflows/picard_mergesamfiles.yml rename to .github/workflows/software/picard_mergesamfiles.yml diff --git a/.github/workflows/samtools_flagstat.yml b/.github/workflows/software/samtools_flagstat.yml similarity index 100% rename from .github/workflows/samtools_flagstat.yml rename to .github/workflows/software/samtools_flagstat.yml diff --git a/.github/workflows/samtools_idxstats.yml b/.github/workflows/software/samtools_idxstats.yml similarity index 100% rename from .github/workflows/samtools_idxstats.yml rename to .github/workflows/software/samtools_idxstats.yml diff --git a/.github/workflows/samtools_index.yml b/.github/workflows/software/samtools_index.yml similarity index 100% rename from .github/workflows/samtools_index.yml rename to .github/workflows/software/samtools_index.yml diff --git a/.github/workflows/samtools_sort.yml b/.github/workflows/software/samtools_sort.yml similarity index 100% rename from .github/workflows/samtools_sort.yml rename to .github/workflows/software/samtools_sort.yml diff --git a/.github/workflows/samtools_stats.yml b/.github/workflows/software/samtools_stats.yml similarity index 100% rename from .github/workflows/samtools_stats.yml rename to .github/workflows/software/samtools_stats.yml diff --git a/.github/workflows/trimgalore.yml b/.github/workflows/software/trimgalore.yml similarity index 100% rename from .github/workflows/trimgalore.yml rename to .github/workflows/software/trimgalore.yml