From 691df9d4696961771182f92a639ec9b47918716a Mon Sep 17 00:00:00 2001
From: Edmund Miller <edmund.a.miller@protonmail.com>
Date: Tue, 24 Nov 2020 17:03:18 -0600
Subject: [PATCH] style(actions): Create seperate software dir

For future subworkflows
---
 .github/workflows/{ => software}/bwa_index.yml                    | 0
 .github/workflows/{ => software}/bwa_mem.yml                      | 0
 .github/workflows/{ => software}/fastqc.yml                       | 0
 .../workflows/{ => software}/picard_collectmultiplemetrics.yml    | 0
 .github/workflows/{ => software}/picard_markduplicates.yml        | 0
 .github/workflows/{ => software}/picard_mergesamfiles.yml         | 0
 .github/workflows/{ => software}/samtools_flagstat.yml            | 0
 .github/workflows/{ => software}/samtools_idxstats.yml            | 0
 .github/workflows/{ => software}/samtools_index.yml               | 0
 .github/workflows/{ => software}/samtools_sort.yml                | 0
 .github/workflows/{ => software}/samtools_stats.yml               | 0
 .github/workflows/{ => software}/trimgalore.yml                   | 0
 12 files changed, 0 insertions(+), 0 deletions(-)
 rename .github/workflows/{ => software}/bwa_index.yml (100%)
 rename .github/workflows/{ => software}/bwa_mem.yml (100%)
 rename .github/workflows/{ => software}/fastqc.yml (100%)
 rename .github/workflows/{ => software}/picard_collectmultiplemetrics.yml (100%)
 rename .github/workflows/{ => software}/picard_markduplicates.yml (100%)
 rename .github/workflows/{ => software}/picard_mergesamfiles.yml (100%)
 rename .github/workflows/{ => software}/samtools_flagstat.yml (100%)
 rename .github/workflows/{ => software}/samtools_idxstats.yml (100%)
 rename .github/workflows/{ => software}/samtools_index.yml (100%)
 rename .github/workflows/{ => software}/samtools_sort.yml (100%)
 rename .github/workflows/{ => software}/samtools_stats.yml (100%)
 rename .github/workflows/{ => software}/trimgalore.yml (100%)

diff --git a/.github/workflows/bwa_index.yml b/.github/workflows/software/bwa_index.yml
similarity index 100%
rename from .github/workflows/bwa_index.yml
rename to .github/workflows/software/bwa_index.yml
diff --git a/.github/workflows/bwa_mem.yml b/.github/workflows/software/bwa_mem.yml
similarity index 100%
rename from .github/workflows/bwa_mem.yml
rename to .github/workflows/software/bwa_mem.yml
diff --git a/.github/workflows/fastqc.yml b/.github/workflows/software/fastqc.yml
similarity index 100%
rename from .github/workflows/fastqc.yml
rename to .github/workflows/software/fastqc.yml
diff --git a/.github/workflows/picard_collectmultiplemetrics.yml b/.github/workflows/software/picard_collectmultiplemetrics.yml
similarity index 100%
rename from .github/workflows/picard_collectmultiplemetrics.yml
rename to .github/workflows/software/picard_collectmultiplemetrics.yml
diff --git a/.github/workflows/picard_markduplicates.yml b/.github/workflows/software/picard_markduplicates.yml
similarity index 100%
rename from .github/workflows/picard_markduplicates.yml
rename to .github/workflows/software/picard_markduplicates.yml
diff --git a/.github/workflows/picard_mergesamfiles.yml b/.github/workflows/software/picard_mergesamfiles.yml
similarity index 100%
rename from .github/workflows/picard_mergesamfiles.yml
rename to .github/workflows/software/picard_mergesamfiles.yml
diff --git a/.github/workflows/samtools_flagstat.yml b/.github/workflows/software/samtools_flagstat.yml
similarity index 100%
rename from .github/workflows/samtools_flagstat.yml
rename to .github/workflows/software/samtools_flagstat.yml
diff --git a/.github/workflows/samtools_idxstats.yml b/.github/workflows/software/samtools_idxstats.yml
similarity index 100%
rename from .github/workflows/samtools_idxstats.yml
rename to .github/workflows/software/samtools_idxstats.yml
diff --git a/.github/workflows/samtools_index.yml b/.github/workflows/software/samtools_index.yml
similarity index 100%
rename from .github/workflows/samtools_index.yml
rename to .github/workflows/software/samtools_index.yml
diff --git a/.github/workflows/samtools_sort.yml b/.github/workflows/software/samtools_sort.yml
similarity index 100%
rename from .github/workflows/samtools_sort.yml
rename to .github/workflows/software/samtools_sort.yml
diff --git a/.github/workflows/samtools_stats.yml b/.github/workflows/software/samtools_stats.yml
similarity index 100%
rename from .github/workflows/samtools_stats.yml
rename to .github/workflows/software/samtools_stats.yml
diff --git a/.github/workflows/trimgalore.yml b/.github/workflows/software/trimgalore.yml
similarity index 100%
rename from .github/workflows/trimgalore.yml
rename to .github/workflows/software/trimgalore.yml