diff --git a/software/raxmlng/main.nf b/software/raxmlng/main.nf index 72336e95..02c01927 100644 --- a/software/raxmlng/main.nf +++ b/software/raxmlng/main.nf @@ -27,10 +27,6 @@ process RAXMLNG { script: def software = getSoftwareName(task.process) - - if (options.args.contains('--bs-trees')) { - options.args = "--all ${options.args}" - } """ raxml-ng \\ $options.args \\ diff --git a/tests/software/raxmlng/main.nf b/tests/software/raxmlng/main.nf index 2e6aeb34..78121807 100644 --- a/tests/software/raxmlng/main.nf +++ b/tests/software/raxmlng/main.nf @@ -3,7 +3,7 @@ nextflow.enable.dsl = 2 include { RAXMLNG as RAXMLNG_NO_BOOTSTRAP } from '../../../software/raxmlng/main.nf' addParams( options: [args:'--model GTR+G'] ) -include { RAXMLNG as RAXMLNG_BOOTSTRAP } from '../../../software/raxmlng/main.nf' addParams( options: [args:'--model GTR+G --bs-trees 1000'] ) +include { RAXMLNG as RAXMLNG_BOOTSTRAP } from '../../../software/raxmlng/main.nf' addParams( options: [args:'--all --model GTR+G --bs-trees 1000'] ) /* * Test without bootstrapping