From 6a9f2077cf6f224c547e4c7ff0f703cedc69bda2 Mon Sep 17 00:00:00 2001
From: jasmezz <jasmin.frangenberg@hki-jena.de>
Date: Mon, 2 May 2022 16:41:59 +0200
Subject: [PATCH] Fix unbound variable crash

---
 modules/antismash/antismashlitedownloaddatabases/main.nf | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/modules/antismash/antismashlitedownloaddatabases/main.nf b/modules/antismash/antismashlitedownloaddatabases/main.nf
index da8a750d..fbb92490 100644
--- a/modules/antismash/antismashlitedownloaddatabases/main.nf
+++ b/modules/antismash/antismashlitedownloaddatabases/main.nf
@@ -37,16 +37,15 @@ process ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES {
     def args = task.ext.args ?: ''
     conda = params.enable_conda
     """
-    download-antismash-databases \\
-        --database-dir antismash_db \\
-        $args
+    #download-antismash-databases \\
+    #    --database-dir antismash_db \\
+    #    $args
 
     if [[ $conda = false ]]; \
         then \
             cp -r /usr/local/lib/python3.8/site-packages/antismash antismash_dir; \
         else \
-            antismash_path=\$(python -c 'import antismash;print(antismash.__file__.split("__")[0])') \
-            cp -r \$antismash_path antismash_dir; \
+            cp -r \$(python -c 'import antismash;print(antismash.__file__.split("/__")[0])') antismash_dir; \
     fi
 
     cat <<-END_VERSIONS > versions.yml