From 6aac5c2c4099f950f43f9db7fa3b4b639c4c7ffc Mon Sep 17 00:00:00 2001 From: jtangrot Date: Mon, 30 May 2022 13:30:27 +0200 Subject: [PATCH] Update test --- tests/modules/vsearch/usearchglobal/test.yml | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/tests/modules/vsearch/usearchglobal/test.yml b/tests/modules/vsearch/usearchglobal/test.yml index 79bcd50e..a593f78f 100644 --- a/tests/modules/vsearch/usearchglobal/test.yml +++ b/tests/modules/vsearch/usearchglobal/test.yml @@ -5,7 +5,16 @@ - vsearch files: - path: output/vsearch/test.aln - md5sum: 2543c4147530dcb1ba4550d3fdb1502a + contains: + - "vsearch --usearch_global transcriptome.fasta --db genome.fasta --id 0.985 --threads 2 --alnout test.aln" + - "Query >lcl|MT192765.1_cds_QIK50427.1_2" + - "%Id TLen Target" + - "100% 29829 MT192765.1" + - "Query 3822nt >lcl|MT192765.1_cds_QIK50427.1_2" + - "Target 29829nt >MT192765.1" + - "Qry 21249 + CAACAGAGTTGTTATTTCTAGTGATGTTCTTGTTAACAACTAA 21291" + - "Tgt 21506 + CAACAGAGTTGTTATTTCTAGTGATGTTCTTGTTAACAACTAA 21548" + - "21291 cols, 21290 ids (100.0%), 1 gaps (0.0%)" - name: vsearch usearchglobal test_vsearch_usearchglobal_userout command: nextflow run ./tests/modules/vsearch/usearchglobal -entry test_vsearch_usearchglobal_userout -c ./tests/config/nextflow.config -c ./tests/modules/vsearch/usearchglobal/nextflow.config