diff --git a/modules/svdb/merge/main.nf b/modules/svdb/merge/main.nf index 365718af..05fb2b17 100644 --- a/modules/svdb/merge/main.nf +++ b/modules/svdb/merge/main.nf @@ -41,6 +41,7 @@ process SVDB_MERGE { cat <<-END_VERSIONS > versions.yml "${task.process}": svdb: \$( echo \$(svdb) | head -1 | sed 's/usage: SVDB-\\([0-9]\\.[0-9]\\.[0-9]\\).*/\\1/' ) + samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//') END_VERSIONS """ @@ -52,6 +53,7 @@ process SVDB_MERGE { cat <<-END_VERSIONS > versions.yml "${task.process}": svdb: \$( echo \$(svdb) | head -1 | sed 's/usage: SVDB-\\([0-9]\\.[0-9]\\.[0-9]\\).*/\\1/' ) + samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//') END_VERSIONS """ }