From 6bb3d5caea237881a09605d89453f2879b3738f3 Mon Sep 17 00:00:00 2001 From: drpatelh Date: Mon, 12 Oct 2020 16:20:35 +0100 Subject: [PATCH] Update container --- software/rsem/preparereference/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/software/rsem/preparereference/main.nf b/software/rsem/preparereference/main.nf index 37a6a318..3dbc2391 100644 --- a/software/rsem/preparereference/main.nf +++ b/software/rsem/preparereference/main.nf @@ -8,10 +8,10 @@ process RSEM_PREPAREREFERENCE { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:'') } - container "quay.io/biocontainers/rsem:1.3.3--pl526ha52163a_0" - //container "https://depot.galaxyproject.org/singularity/rsem:1.3.3--pl526ha52163a_0" + container "quay.io/biocontainers/mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b:606b713ec440e799d53a2b51a6e79dbfd28ecf3e-0" + //container "https://depot.galaxyproject.org/singularity/mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b:606b713ec440e799d53a2b51a6e79dbfd28ecf3e-0" - conda (params.conda ? "bioconda::rsem=1.3.3" : null) + conda (params.conda ? "bioconda::rsem=1.3.3 bioconda::star=2.7.6a" : null) input: path fasta