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update typos. change quote from ' to ". (#652)

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JIANHONG OU 2021-08-16 05:57:22 -04:00 committed by GitHub
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commit 6e68c1af9a
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modules/cooler/digest/main.nf
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@ -5,7 +5,7 @@ params.options = [:]
options = initOptions(params.options) options = initOptions(params.options)
process COOLER_DIGEST { process COOLER_DIGEST {
tag '$fasta' tag "$fasta"
label 'process_medium' label 'process_medium'
publishDir "${params.outdir}", publishDir "${params.outdir}",
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
@ -32,7 +32,7 @@ process COOLER_DIGEST {
""" """
cooler digest \\ cooler digest \\
$options.args \\ $options.args \\
-o "${fasta.baseName}_${enzyme.replaceAll(/[^0-9a-zA-Z]+/, "_")}.bed" \\ -o "${fasta.baseName}_${enzyme.replaceAll(/[^0-9a-zA-Z]+/, '_')}.bed" \\
$chromsizes \\ $chromsizes \\
$fasta \\ $fasta \\
$enzyme $enzyme