diff --git a/software/bedtools/merge/main.nf b/software/bedtools/merge/main.nf index ea34f10b..6f32f441 100644 --- a/software/bedtools/merge/main.nf +++ b/software/bedtools/merge/main.nf @@ -25,7 +25,7 @@ process BEDTOOLS_MERGE { script: def software = getSoftwareName(task.process) """ - bedtools merge -i $sort ${options.args} > test.merged.bed + bedtools merge -i $sort ${options.args} > ${prefix}.merged.bed bedtools --version | sed -e "s/Bedtools v//g" > ${software}.version.txt """ }