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Update main.nf

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Harshil Patel 2022-05-25 19:42:15 +01:00 committed by GitHub
parent 241a1de035
commit 72a31b76eb
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1 changed files with 11 additions and 11 deletions
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modules/mosdepth/main.nf
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@ -14,17 +14,17 @@ process MOSDEPTH {
output: output:
tuple val(meta), path('*.global.dist.txt') , emit: global_txt tuple val(meta), path('*.global.dist.txt') , emit: global_txt
tuple val(meta), path('*.region.dist.txt') , emit: regions_txt , optional:true
tuple val(meta), path('*.summary.txt') , emit: summary_txt tuple val(meta), path('*.summary.txt') , emit: summary_txt
tuple val(meta), path('*.per-base.d4') , emit: per_base_d4 , optional:true tuple val(meta), path('*.region.dist.txt') , optional:true, emit: regions_txt
tuple val(meta), path('*.per-base.bed.gz') , emit: per_base_bed, optional:true tuple val(meta), path('*.per-base.d4') , optional:true, emit: per_base_d4
tuple val(meta), path('*.per-base.bed.gz.csi') , emit: per_base_csi, optional:true tuple val(meta), path('*.per-base.bed.gz') , optional:true, emit: per_base_bed
tuple val(meta), path('*.regions.bed.gz') , emit: regions_bed , optional:true tuple val(meta), path('*.per-base.bed.gz.csi') , optional:true, emit: per_base_csi
tuple val(meta), path('*.regions.bed.gz.csi') , emit: regions_csi , optional:true tuple val(meta), path('*.regions.bed.gz') , optional:true, emit: regions_bed
tuple val(meta), path('*.quantized.bed.gz') , emit: quantized_bed , optional:true tuple val(meta), path('*.regions.bed.gz.csi') , optional:true, emit: regions_csi
tuple val(meta), path('*.quantized.bed.gz.csi') , emit: quantized_csi , optional:true tuple val(meta), path('*.quantized.bed.gz') , optional:true, emit: quantized_bed
tuple val(meta), path('*.thresholds.bed.gz') , emit: thresholds_bed , optional:true tuple val(meta), path('*.quantized.bed.gz.csi') , optional:true, emit: quantized_csi
tuple val(meta), path('*.thresholds.bed.gz.csi'), emit: thresholds_csi , optional:true tuple val(meta), path('*.thresholds.bed.gz') , optional:true, emit: thresholds_bed
tuple val(meta), path('*.thresholds.bed.gz.csi'), optional:true, emit: thresholds_csi
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:
@ -44,7 +44,7 @@ process MOSDEPTH {
""" """
mosdepth \\ mosdepth \\
--threads ${task.cpus} \\ --threads $task.cpus \\
$interval \\ $interval \\
$reference \\ $reference \\
$args \\ $args \\