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Update dsh-bio to 2.1 (#2100)

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Update dsh-bio to 2.1.
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Michael L Heuer 2022-09-26 04:41:33 -05:00 committed by GitHub
parent 9d5ad1894b
commit 72adfbff72
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5 changed files with 15 additions and 15 deletions
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6
modules/dshbio/exportsegments/main.nf
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@ -2,10 +2,10 @@ process DSHBIO_EXPORTSEGMENTS {
tag "${meta.id}" tag "${meta.id}"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.8" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/dsh-bio:2.0.8--hdfd78af_0' : 'https://depot.galaxyproject.org/singularity/dsh-bio:2.1--hdfd78af_0' :
'quay.io/biocontainers/dsh-bio:2.0.8--hdfd78af_0' }" 'quay.io/biocontainers/dsh-bio:2.1--hdfd78af_0' }"
input: input:
tuple val(meta), path(gfa) tuple val(meta), path(gfa)

6
modules/dshbio/filterbed/main.nf
View file

@ -2,10 +2,10 @@ process DSHBIO_FILTERBED {
tag "${meta.id}" tag "${meta.id}"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.8" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/dsh-bio:2.0.8--hdfd78af_0' : 'https://depot.galaxyproject.org/singularity/dsh-bio:2.1--hdfd78af_0' :
'quay.io/biocontainers/dsh-bio:2.0.8--hdfd78af_0' }" 'quay.io/biocontainers/dsh-bio:2.1--hdfd78af_0' }"
input: input:
tuple val(meta), path(bed) tuple val(meta), path(bed)

6
modules/dshbio/filtergff3/main.nf
View file

@ -2,10 +2,10 @@ process DSHBIO_FILTERGFF3 {
tag "${meta.id}" tag "${meta.id}"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.8" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/dsh-bio:2.0.8--hdfd78af_0' : 'https://depot.galaxyproject.org/singularity/dsh-bio:2.1--hdfd78af_0' :
'quay.io/biocontainers/dsh-bio:2.0.8--hdfd78af_0' }" 'quay.io/biocontainers/dsh-bio:2.1--hdfd78af_0' }"
input: input:
tuple val(meta), path(gff3) tuple val(meta), path(gff3)

6
modules/dshbio/splitbed/main.nf
View file

@ -2,10 +2,10 @@ process DSHBIO_SPLITBED {
tag "${meta.id}" tag "${meta.id}"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.8" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/dsh-bio:2.0.8--hdfd78af_0' : 'https://depot.galaxyproject.org/singularity/dsh-bio:2.1--hdfd78af_0' :
'quay.io/biocontainers/dsh-bio:2.0.8--hdfd78af_0' }" 'quay.io/biocontainers/dsh-bio:2.1--hdfd78af_0' }"
input: input:
tuple val(meta), path(bed) tuple val(meta), path(bed)

6
modules/dshbio/splitgff3/main.nf
View file

@ -2,10 +2,10 @@ process DSHBIO_SPLITGFF3 {
tag "${meta.id}" tag "${meta.id}"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.8" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/dsh-bio:2.0.8--hdfd78af_0' : 'https://depot.galaxyproject.org/singularity/dsh-bio:2.1--hdfd78af_0' :
'quay.io/biocontainers/dsh-bio:2.0.8--hdfd78af_0' }" 'quay.io/biocontainers/dsh-bio:2.1--hdfd78af_0' }"
input: input:
tuple val(meta), path(gff3) tuple val(meta), path(gff3)