From 73530e8df73af05d91b463bfb0863a4673e438be Mon Sep 17 00:00:00 2001 From: kevinmenden Date: Tue, 8 Dec 2020 14:13:30 +0100 Subject: [PATCH] added bowtie index test github workflow --- .github/workflows/bowtie_index.yml | 36 ++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 .github/workflows/bowtie_index.yml diff --git a/.github/workflows/bowtie_index.yml b/.github/workflows/bowtie_index.yml new file mode 100644 index 00000000..80ff13c9 --- /dev/null +++ b/.github/workflows/bowtie_index.yml @@ -0,0 +1,36 @@ +name: bowtie_index +on: + push: + paths: + - software/bowtie/index/** + - .github/workflows/bowtie_index.yml + - tests/software/bowtie/** + pull_request: + paths: + - software/bowtie/index/** + - .github/workflows/bowtie_index.yml + - tests/software/bowtie/** + +jobs: + ci_test: + runs-on: ubuntu-latest + env: + NXF_ANSI_LOG: false + steps: + - uses: actions/checkout@v2 + + - name: Install Nextflow + run: | + export NXF_VER="20.07.1" + wget -qO- get.nextflow.io | bash + sudo mv nextflow /usr/local/bin/ + + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: "3.x" + - name: Install dependencies + run: python -m pip install --upgrade pip pytest-workflow + + # Test the module + - run: pytest --tag bowtie_index --symlink --wt 2