millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-10 20:23:10 +00:00
Code Issues Releases Packages Activity

add prefix

Browse source
This commit is contained in:
SusiJo 2022-05-24 14:20:19 +02:00
parent 5db94ea0ee
commit 749edce069
1 changed files with 2 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

3
modules/cnvkit/reference/main.nf
View file

@ -21,6 +21,7 @@ process CNVKIT_REFERENCE {
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}"
"""
cnvkit.py \\
@ -28,7 +29,7 @@ process CNVKIT_REFERENCE {
--fasta $fasta \\
--targets $targets \\
--antitargets $antitargets \\
--output reference.cnn \\
--output ${prefix}.reference.cnn \\
$args
cat <<-END_VERSIONS > versions.yml