diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml index ebf1c4da..17c93733 100644 --- a/tests/config/pytest_modules.yml +++ b/tests/config/pytest_modules.yml @@ -1251,11 +1251,11 @@ spatyper: - modules/spatyper/** - tests/modules/spatyper/** -sratools/fasterqdump: +sratools/fasterqdump: &sratools/fasterqdump - modules/sratools/fasterqdump/** - tests/modules/sratools/fasterqdump/** -sratools/prefetch: +sratools/prefetch: &sratools/prefetch - modules/sratools/prefetch/** - tests/modules/sratools/prefetch/** @@ -1394,6 +1394,8 @@ subworkflows/align_bowtie2: subworkflows/sra_fastq: - subworkflows/nf-core/sra_fastq/** - tests/subworkflows/nf-core/sra_fastq/** + - *sratools/fasterqdump + - *sratools/prefetch subworkflows/gatk_create_som_pon: - subworkflows/nf-core/gatk_create_som_pon/** diff --git a/tests/modules/sratools/fasterqdump/test.yml b/tests/modules/sratools/fasterqdump/test.yml index 94da4ed8..7d022a0d 100644 --- a/tests/modules/sratools/fasterqdump/test.yml +++ b/tests/modules/sratools/fasterqdump/test.yml @@ -1,8 +1,7 @@ - name: sratools fasterqdump test_sratools_fasterqdump_single_end command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_single_end -c tests/config/nextflow.config tags: - - sratools - - sratools/fasterqdump + - subworkflows/sra_fastq files: - path: output/sratools/SRR13255544.fastq.gz md5sum: 1054c7b71884acdb5eed8a378f18be82 @@ -12,8 +11,7 @@ - name: sratools fasterqdump test_sratools_fasterqdump_paired_end command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_paired_end -c tests/config/nextflow.config tags: - - sratools - - sratools/fasterqdump + - subworkflows/sra_fastq files: - path: output/sratools/SRR11140744_1.fastq.gz md5sum: 193809c784a4ea132ab2a253fa4f55b6