From 74e134f19de7025092403d530aac519bfe548ef2 Mon Sep 17 00:00:00 2001
From: Edmund Miller <edmund.a.miller@protonmail.com>
Date: Wed, 27 Oct 2021 17:34:24 -0500
Subject: [PATCH] ci: Update sra_fastq tags and pytest_modules

---
 tests/config/pytest_modules.yml             | 6 ++++--
 tests/modules/sratools/fasterqdump/test.yml | 6 ++----
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/tests/config/pytest_modules.yml b/tests/config/pytest_modules.yml
index ebf1c4da..17c93733 100644
--- a/tests/config/pytest_modules.yml
+++ b/tests/config/pytest_modules.yml
@@ -1251,11 +1251,11 @@ spatyper:
   - modules/spatyper/**
   - tests/modules/spatyper/**
 
-sratools/fasterqdump:
+sratools/fasterqdump: &sratools/fasterqdump
   - modules/sratools/fasterqdump/**
   - tests/modules/sratools/fasterqdump/**
 
-sratools/prefetch:
+sratools/prefetch: &sratools/prefetch
   - modules/sratools/prefetch/**
   - tests/modules/sratools/prefetch/**
 
@@ -1394,6 +1394,8 @@ subworkflows/align_bowtie2:
 subworkflows/sra_fastq:
   - subworkflows/nf-core/sra_fastq/**
   - tests/subworkflows/nf-core/sra_fastq/**
+  - *sratools/fasterqdump
+  - *sratools/prefetch
 
 subworkflows/gatk_create_som_pon:
   - subworkflows/nf-core/gatk_create_som_pon/**
diff --git a/tests/modules/sratools/fasterqdump/test.yml b/tests/modules/sratools/fasterqdump/test.yml
index 94da4ed8..7d022a0d 100644
--- a/tests/modules/sratools/fasterqdump/test.yml
+++ b/tests/modules/sratools/fasterqdump/test.yml
@@ -1,8 +1,7 @@
 - name: sratools fasterqdump test_sratools_fasterqdump_single_end
   command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_single_end -c tests/config/nextflow.config
   tags:
-    - sratools
-    - sratools/fasterqdump
+    - subworkflows/sra_fastq
   files:
     - path: output/sratools/SRR13255544.fastq.gz
       md5sum: 1054c7b71884acdb5eed8a378f18be82
@@ -12,8 +11,7 @@
 - name: sratools fasterqdump test_sratools_fasterqdump_paired_end
   command: nextflow run tests/modules/sratools/fasterqdump -entry test_sratools_fasterqdump_paired_end -c tests/config/nextflow.config
   tags:
-    - sratools
-    - sratools/fasterqdump
+    - subworkflows/sra_fastq
   files:
     - path: output/sratools/SRR11140744_1.fastq.gz
       md5sum: 193809c784a4ea132ab2a253fa4f55b6