millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

Fix bowtie builds (#273)

Browse source 
* Fix bowtie  build test

* Forgot to delete old bowtie_build

* Fix bowtie2 build tests

* Add initOptions include on hisat2 extractsplicesites
This commit is contained in:
Jose Espinosa-Carrasco 2021-03-15 15:39:42 +01:00 committed by GitHub
parent 66fd57a8bc
commit 74ff11b07b
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
6 changed files with 6 additions and 6 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
software/hisat2/extractsplicesites/main.nf
View file

@ -1,5 +1,5 @@
// Import generic module functions
include { saveFiles; getSoftwareName } from './functions'
include { initOptions; saveFiles; getSoftwareName } from './functions'
params.options = [:]
options = initOptions(params.options)

6
tests/config/pytest_software.yml
View file

@ -76,16 +76,16 @@ blast_blastn:
bowtie_build:
- software/bowtie/build/**
- tests/software/bowtie/build/**
- tests/software/bowtie/build_test/**
bowtie_align:
- software/bowtie/align/**
- software/bowtie/build/**
- tests/software/bowtie/align/**
bowtie2:
bowtie2_build:
- software/bowtie2/build/**
- tests/software/bowtie2/build/**
- tests/software/bowtie2/build_test/**
bowtie2_align:
- software/bowtie2/align/**

0
tests/software/bowtie/build/main.nf → tests/software/bowtie/build_test/main.nf
View file

2
tests/software/bowtie/build/test.yml → tests/software/bowtie/build_test/test.yml
View file

@ -1,5 +1,5 @@
- name: bowtie build
command: nextflow run ./tests/software/bowtie/build -entry test_bowtie_build -c tests/config/nextflow.config
command: nextflow run ./tests/software/bowtie/build_test -entry test_bowtie_build -c tests/config/nextflow.config
tags:
- bowtie
- bowtie_build

0
tests/software/bowtie2/build/main.nf → tests/software/bowtie2/build_test/main.nf
View file

2
tests/software/bowtie2/build/test.yml → tests/software/bowtie2/build_test/test.yml
View file

@ -1,5 +1,5 @@
- name: bowtie2 build
command: nextflow run ./tests/software/bowtie2/build -entry test_bowtie2_build -c tests/config/nextflow.config
command: nextflow run ./tests/software/bowtie2/build_test -entry test_bowtie2_build -c tests/config/nextflow.config
tags:
- bowtie2
- bowtie2_build