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Update output paths
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parent
268c56c20d
commit
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1 changed files with 7 additions and 7 deletions
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@ -2,7 +2,7 @@
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nextflow.enable.dsl = 2
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nextflow.enable.dsl = 2
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params.outdir = "results/"
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params.outdir = "output/"
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params.publish_dir_mode = "copy"
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params.publish_dir_mode = "copy"
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params.conda = false
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params.conda = false
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@ -13,11 +13,11 @@ include { FASTQC } from '../main.nf'
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*/
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*/
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workflow test_single_end {
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workflow test_single_end {
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def reads = []
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def input = []
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reads = [ [ id:'test', single_end:true ],
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input = [ [ id:'test', single_end:true ],
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[ file('input/test_single_end.fastq.gz', checkIfExists: true) ] ]
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[ file('input/test_single_end.fastq.gz', checkIfExists: true) ] ]
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FASTQC ( reads, [:] )
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FASTQC ( input, [ publish_dir:'test_single_end' ] )
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}
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}
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/*
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/*
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@ -25,11 +25,11 @@ workflow test_single_end {
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*/
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*/
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workflow test_paired_end {
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workflow test_paired_end {
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def reads = []
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def input = []
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reads = [ [ id:'test', single_end:false ],
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input = [ [ id:'test', single_end:false ],
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[ file('input/test_R1.fastq.gz', checkIfExists: true), file('input/test_R2.fastq.gz', checkIfExists: true) ] ]
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[ file('input/test_R1.fastq.gz', checkIfExists: true), file('input/test_R2.fastq.gz', checkIfExists: true) ] ]
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FASTQC ( reads, [:] )
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FASTQC ( input, [ publish_dir:'test_paired_end' ] )
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}
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}
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workflow {
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workflow {
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